Posted by: shrikantmantri | October 25, 2009

The gputools package enables GPU computing in R.

via Bioinformatics on 10/24/09


Publication Date: 2009 Oct 22 PMID: 19850754
Authors: Buckner, J. – Wilson, J. – Seligman, M. – Athey, B. – Watson, S. – Meng, F.
Journal: Bioinformatics

MOTIVATION: By default, the R statistical environment does not make use of parallelism. Researchers may resort to expensive solutions such as cluster hardware for large analysis tasks. Graphics processing units (GPUs) provide an inexpensive and computationally powerful alternative. Using R and the CUDA toolkit from Nvidia, we have implemented several functions commonly used in microarray gene expression analysis for GPU equipped computers. RESULTS: R users can take advantage of the better performance provided by an Nvidia GPU. AVAILABILITY: The package is available from CRAN, the R project’s repository of packages, at http://cran.r-project.org/web/packages/gputools More information about our gputools R package is available at http://brainarray.mbni.med.umich.edu/brainarray/Rgpgpu CONTACT: bucknerj@umich.edu.

post to: CiteULike

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